Gap Close/Fill N using GapCloser(GapCloser程序进行补洞)

功能简介

分析模块,采用GapCloser程序进行补洞。封装了Software: GapCloser-bin-v1.12-r6。

The GapCloser is designed to close the gaps emerging during the scaffolding process by SOAPdenovo or other assembler, using the abundant pair relationships of short reads.


分析模块引用了 GapCloser-bin-v1.12-r6 软件(https://sourceforge.net/projects/soapdenovo2/files/GapCloser/)。

相关文献如下所示:

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler GigaScience, Vol. 1, No. 1. (2012), 18, doi:10.1186/2047-217x-1-18